saundersp/JupyterHelper
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saundersp:main

7 Commits
7244d265fa ... main

Author SHA1 Message Date
saundersp
d41a25b366 Removed deprecated ServerApp.iopub_data_rate_limit option 2025-01-23 16:07:49 +01:00
saundersp
3c382e96cb Using R_LIBS_SITE in install.packages for distros who doesn't respect environnement variable 2025-01-23 16:07:26 +01:00
saundersp
cb5ba1e0c1 Removed mkdir and rm verbose flags 2024-12-18 17:31:17 +01:00
saundersp
db8d3ef52b Changed VENV_PATH to .venv 2024-10-27 20:40:52 +01:00
saundersp
606b6c8ff9 install cmd create less directories 2024-08-14 01:18:27 +02:00
saundersp
d890e88f16 python's venv now updates pip setuptools 2024-08-14 01:18:09 +02:00
saundersp
4286fc8a20 uninstall and kernel cmds are now more verbose 2024-08-14 01:17:25 +02:00
1 changed files with 8 additions and 9 deletions
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17
helper.sh
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@ -13,7 +13,7 @@ Available flags:
t, -t, tensorboard, --tensorboard Launch Tensorboard locally to the script (Require installation beforehand).
h, -h, help, --help Which display this help message."
VENV_PATH=./venv
VENV_PATH=./.venv
JUPYTER_ROOT_PATH=./jupyter
TENSORBOARD_LOG_DIR=./logs
export R_LIBS_SITE=./libs
@ -39,23 +39,22 @@ enable_venv(){
case "$1" in
i|-i|install|--install)
python -m venv "$VENV_PATH"
mkdir -p "$JUPYTER_ROOT_PATH"/{settings,workspace,config,runtime,data} "$JUPYTERLAB_SETTINGS_DIR"/@jupyterlab/{notebook-extension,extensionmanager-extension,apputils-extension}
python -m venv --upgrade-deps "$VENV_PATH"
mkdir -p "$JUPYTERLAB_SETTINGS_DIR"/@jupyterlab/{notebook-extension,extensionmanager-extension,apputils-extension}
# Setting it to zero doesn't have the expected result, therefore, let's set it to an abnormally large number.
echo '{ "maxNumberOutputs": 10000000000 }' > "$JUPYTERLAB_SETTINGS_DIR"/@jupyterlab/notebook-extension/tracker.jupyterlab-settings
echo '{ "disclaimed": true }' > "$JUPYTERLAB_SETTINGS_DIR"/@jupyterlab/extensionmanager-extension/plugin.jupyterlab-settings
echo '{ "theme": "JupyterLab Dark" }' > "$JUPYTERLAB_SETTINGS_DIR"/@jupyterlab/apputils-extension/themes.jupyterlab-settings
echo '{ "fetchNews": "false" }' > "$JUPYTERLAB_SETTINGS_DIR"/@jupyterlab/apputils-extension/notification.jupyterlab-settings
enable_venv "$2"
python -m pip install --timeout 120 --retries 10000000000 -U pip setuptools
pip install --timeout 120 --retries 10000000000 -r requirements.txt
pip install --timeout 120 --retries 1000000000000 -r requirements.txt
;;
k|-k|kernel|--kernel)
enable_venv "$2"
mkdir -p "$R_LIBS_SITE"
mkdir -pv "$R_LIBS_SITE"
if command -v Rscript >> /dev/null; then
Rscript -e 'install.packages("IRkernel",repos="http://cran.r-project.org");library(IRkernel);IRkernel::installspec()'
Rscript -e "install.packages('IRkernel','$R_LIBS_SITE','http://cran.r-project.org');library(IRkernel);IRkernel::installspec()"
else
echo "R isn't installed"
exit 1
@ -74,13 +73,13 @@ case "$1" in
;;
U|-U|uninstall|--uninstall)
rm -rf "$VENV_PATH" "$JUPYTER_ROOT_PATH" "$R_LIBS_SITE"
rm -rf "$VENV_PATH" "$JUPYTER_ROOT_PATH" "$R_LIBS_SITE" .ipynb_checkpoints __pycache__
;;
l|-l|launch|--launch)
enable_venv "$2"
if command -v jupyter >> /dev/null; then
exec jupyter lab --ip 0.0.0.0 --ServerApp.iopub_data_rate_limit 1e16
exec jupyter lab --ip 0.0.0.0
else
echo "Jupyter lab isn't installed"
exit 1