from typing import Any, Callable, List, Union, Final from time import perf_counter_ns from numba import njit import numpy as np import pickle import os from config import MODEL_DIR, OUT_DIR from decorators import njit time_formats: Final = ["ns", "µs", "ms", "s", "m", "h", "j", "w", "M", "y", "c"] time_numbers: Final = np.array([1, 1e3, 1e6, 1e9, 6e10, 36e11, 864e11, 6048e11, 26784e11, 31536e12, 31536e14], dtype = np.uint64) @njit('str(uint64)') def format_time_ns(time: int) -> str: """Format the time in nanoseconds in human readable format. Args: time (int): Time in nanoseconds. Returns: str: The formatted human readable string. """ assert time >= 0, "Incorrect time stamp" if time == 0: return "0ns" s = "" for i in range(time_numbers.shape[0])[::-1]: if time >= time_numbers[i]: res = int(time // time_numbers[i]) time = time % time_numbers[i] s += f"{res}{time_formats[i]} " assert time == 0, "Leftover in formatting time !" return s.rstrip() def picke_multi_loader(filenames: List[str], save_dir: str = MODEL_DIR) -> List[Any]: """Load multiple pickle data files. Args: filenames (List[str]): List of all the filename to load. save_dir (str, optional): Path of the files to load. Defaults to MODELS_DIR (see config.py). Returns: List[Any]. List of loaded pickle data files. """ b = [] for f in filenames: filepath = f"{save_dir}/{f}.pkl" if os.path.exists(filepath): with open(filepath, "rb") as filebyte: b.append(pickle.load(filebyte)) else: b.append(None) return b def benchmark_function(step_name: str, fnc: Callable) -> Any: """Benchmark a function and display the result of stdout. Args: step_name (str): Name of the function to call. fnc (Callable): Function to call. Returns: Any: Result of the function. """ print(f"{step_name}...", end = "\r") s = perf_counter_ns() b = fnc() e = perf_counter_ns() - s print(f"| {step_name:<49} | {e:>18,} | {format_time_ns(e):<29} |") return b def state_saver(step_name: str, filename: Union[str, List[str]], fnc, force_redo: bool = False, save_state: bool = True, save_dir: str = OUT_DIR) -> Any: """Either execute a function then saves the result or load the already existing result. Args: step_name (str): Name of the function to call. filename (Union[str, List[str]]): Name or list of names of the filenames where the result(s) are saved. fnc ([type]): Function to call. force_redo (bool, optional): Recall the function even if the result(s) is already saved. Defaults to False. save_dir (str, optional): Path of the directory to save the result(s). Defaults to OUT_DIR (see config.py). Returns: Any: The result(s) of the called function """ if isinstance(filename, str): if not os.path.exists(f"{save_dir}/{filename}.pkl") or force_redo: b = benchmark_function(step_name, fnc) if save_state: print(f"Saving results of {step_name}", end = '\r') with open(f"{save_dir}/{filename}.pkl", 'wb') as f: pickle.dump(b, f) print(' ' * 100, end = '\r') return b else: print(f"Loading results of {step_name}", end = '\r') with open(f"{save_dir}/{filename}.pkl", "rb") as f: res = pickle.load(f) print(f"| {step_name:<49} | {'None':>18} | {'loaded saved state':<29} |") return res elif isinstance(filename, list): abs = False for fn in filename: if not os.path.exists(f"{save_dir}/{fn}.pkl"): abs = True break if abs or force_redo: b = benchmark_function(step_name, fnc) if save_state: print(f"Saving results of {step_name}", end = '\r') for bi, fnI in zip(b, filename): with open(f"{save_dir}/{fnI}.pkl", 'wb') as f: pickle.dump(bi, f) print(' ' * 100, end = '\r') return b print(f"| {step_name:<49} | {'None':>18} | {'loaded saved state':<29} |") b = [] print(f"Loading results of {step_name}", end = '\r') for fn in filename: with open(f"{save_dir}/{fn}.pkl", "rb") as f: b.append(pickle.load(f)) print(' ' * 100, end = '\r') return b else: assert False, f"Incompatible filename type = {type(filename)}" @njit('boolean(int32[:, :], uint16[:, :])') def unit_test_argsort_2d(arr: np.ndarray, indices: np.ndarray) -> bool: n = indices.shape[0] total = indices.shape[0] * indices.shape[1] for i, sub_indices in enumerate(indices): for j in range(sub_indices.shape[0] - 1): if arr[i, sub_indices[j]] <= arr[i, sub_indices[j + 1]]: n += 1 if n != total: print(n, total, n / (total)) return n == total